AJR25761.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR25761.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (83 aa)

Predicted Functional Partners:

AJR25762.1

0.632

AJR25760.1

0.493

AJR25759.1

0.492

AJR25758.1

0.478

AJR26530.1

0.420

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR25758.1	AJR25759.1	TZ53_20430	TZ53_20435	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
AJR25758.1	AJR25760.1	TZ53_20430	TZ53_20440	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.893
AJR25758.1	AJR25761.1	TZ53_20430	TZ53_20445	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
AJR25758.1	AJR25762.1	TZ53_20430	TZ53_20450	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma 70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.412
AJR25759.1	AJR25758.1	TZ53_20435	TZ53_20430	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
AJR25759.1	AJR25760.1	TZ53_20435	TZ53_20440	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
AJR25759.1	AJR25761.1	TZ53_20435	TZ53_20445	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
AJR25760.1	AJR25758.1	TZ53_20440	TZ53_20430	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.893
AJR25760.1	AJR25759.1	TZ53_20440	TZ53_20435	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
AJR25760.1	AJR25761.1	TZ53_20440	TZ53_20445	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493
AJR25760.1	AJR25762.1	TZ53_20440	TZ53_20450	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma 70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.424
AJR25761.1	AJR25758.1	TZ53_20445	TZ53_20430	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
AJR25761.1	AJR25759.1	TZ53_20445	TZ53_20435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
AJR25761.1	AJR25760.1	TZ53_20445	TZ53_20440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493
AJR25761.1	AJR25762.1	TZ53_20445	TZ53_20450	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma 70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.632
AJR25761.1	AJR26530.1	TZ53_20445	TZ53_20455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.420
AJR25762.1	AJR25758.1	TZ53_20450	TZ53_20430	RNA polymerase sigma 70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
AJR25762.1	AJR25760.1	TZ53_20450	TZ53_20440	RNA polymerase sigma 70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
AJR25762.1	AJR25761.1	TZ53_20450	TZ53_20445	RNA polymerase sigma 70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
AJR25762.1	AJR26530.1	TZ53_20450	TZ53_20455	RNA polymerase sigma 70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.508