AJR25826.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR25826.1

Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)

Predicted Functional Partners:

AJR24360.1

0.731

AJR23179.1

0.722

AJR22555.1

0.685

AJR26318.1

0.644

AJR24864.1

0.639

AJR25837.1

0.636

AJR25135.1

0.587

AJR26474.1

0.577

AJR25790.1

0.576

AJR22786.1

0.563

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22555.1	AJR22786.1	TZ53_00885	TZ53_02375	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.491
AJR22555.1	AJR23179.1	TZ53_00885	TZ53_04755	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.666
AJR22555.1	AJR24360.1	TZ53_00885	TZ53_12085	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
AJR22555.1	AJR24864.1	TZ53_00885	TZ53_15145	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.752
AJR22555.1	AJR25135.1	TZ53_00885	TZ53_16785	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
AJR22555.1	AJR25826.1	TZ53_00885	TZ53_20825	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.685
AJR22555.1	AJR25837.1	TZ53_00885	TZ53_20895	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
AJR22555.1	AJR26318.1	TZ53_00885	TZ53_10710	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.641
AJR22555.1	AJR26474.1	TZ53_00885	TZ53_17465	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.791
AJR22786.1	AJR22555.1	TZ53_02375	TZ53_00885	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.491
AJR22786.1	AJR24360.1	TZ53_02375	TZ53_12085	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AJR22786.1	AJR24864.1	TZ53_02375	TZ53_15145	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
AJR22786.1	AJR25135.1	TZ53_02375	TZ53_16785	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.683
AJR22786.1	AJR25826.1	TZ53_02375	TZ53_20825	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
AJR22786.1	AJR25837.1	TZ53_02375	TZ53_20895	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.749
AJR22786.1	AJR26318.1	TZ53_02375	TZ53_10710	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.591
AJR22786.1	AJR26474.1	TZ53_02375	TZ53_17465	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
AJR23179.1	AJR22555.1	TZ53_04755	TZ53_00885	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.666
AJR23179.1	AJR24360.1	TZ53_04755	TZ53_12085	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.562
AJR23179.1	AJR24864.1	TZ53_04755	TZ53_15145	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.671