Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AJR25848.1Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)    
Predicted Functional Partners:
AJR25847.1
GDP-mannose-dependent alpha-mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.952
AJR25097.1
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.730
AJR25846.1
Cytoplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.680
AJR26544.1
NAD(P)H-quinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.602
AJR24442.1
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.530
AJR24286.1
D-arabinose 5-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SIS family. GutQ/KpsF subfamily.
     
 0.441
AJR25849.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.436
AJR23706.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
  
    0.434
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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