AJR25864.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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textmining

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co-expression

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gene co-occurrence

gene fusions

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[Homology]

Score

AJR25864.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (161 aa)

Predicted Functional Partners:

AJR25865.1

0.929

AJR25868.1

0.925

AJR25861.1

0.873

AJR25857.1

0.816

AJR25858.1

0.816

AJR25863.1

0.799

AJR25855.1

0.770

AJR23706.1

0.766

AJR24563.1

0.724

AJR26548.1

0.675

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23706.1	AJR25855.1	TZ53_08225	TZ53_21015	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.751
AJR23706.1	AJR25857.1	TZ53_08225	TZ53_21030	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.	Phage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.699
AJR23706.1	AJR25858.1	TZ53_08225	TZ53_21035	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.699
AJR23706.1	AJR25861.1	TZ53_08225	TZ53_21055	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.698
AJR23706.1	AJR25864.1	TZ53_08225	TZ53_21075	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
AJR23706.1	AJR25865.1	TZ53_08225	TZ53_21080	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.	Phage capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700
AJR23706.1	AJR25868.1	TZ53_08225	TZ53_21095	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.	Portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.716
AJR24563.1	AJR25855.1	TZ53_13365	TZ53_21015	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.508
AJR24563.1	AJR25864.1	TZ53_13365	TZ53_21075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.724
AJR25855.1	AJR23706.1	TZ53_21015	TZ53_08225	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.	0.751
AJR25855.1	AJR24563.1	TZ53_21015	TZ53_13365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.508
AJR25855.1	AJR25857.1	TZ53_21015	TZ53_21030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
AJR25855.1	AJR25858.1	TZ53_21015	TZ53_21035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
AJR25855.1	AJR25861.1	TZ53_21015	TZ53_21055	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
AJR25855.1	AJR25864.1	TZ53_21015	TZ53_21075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AJR25855.1	AJR25865.1	TZ53_21015	TZ53_21080	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
AJR25855.1	AJR25868.1	TZ53_21015	TZ53_21095	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935
AJR25857.1	AJR23706.1	TZ53_21030	TZ53_08225	Phage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.	0.699
AJR25857.1	AJR25855.1	TZ53_21030	TZ53_21015	Phage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
AJR25857.1	AJR25858.1	TZ53_21030	TZ53_21035	Phage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995