Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJR25867.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (106 aa)    
Predicted Functional Partners:
AJR25866.1
Peptidase U35; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.909
AJR25868.1
Portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.888
AJR25865.1
Phage capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.811
AJR25858.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.753
AJR24799.1
Pilus assembly protein CpaD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.717
AJR25859.1
Tail tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.712
AJR22597.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.694
AJR25140.1
Tight adherence protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.687
AJR24321.1
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.678
AJR25861.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.678
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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