AJR25893.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR25893.1

Addiction module antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (91 aa)

Predicted Functional Partners:

AJR25892.1

0.975

AJR22744.1

0.837

AJR23109.1

0.837

AJR23380.1

0.831

AJR23525.1

0.827

AJR23528.1

0.639

AJR26553.1

0.559

AJR25894.1

0.548

AJR26065.1

0.515

AJR24418.1

0.444

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22744.1	AJR23109.1	TZ53_02075	TZ53_04330	CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
AJR22744.1	AJR25893.1	TZ53_02075	TZ53_21245	CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Addiction module antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.837
AJR23109.1	AJR22744.1	TZ53_04330	TZ53_02075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
AJR23109.1	AJR25893.1	TZ53_04330	TZ53_21245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Addiction module antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.837
AJR23380.1	AJR23525.1	TZ53_06135	TZ53_07100	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Addiction module antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
AJR23380.1	AJR25893.1	TZ53_06135	TZ53_21245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Addiction module antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.831
AJR23525.1	AJR23380.1	TZ53_07100	TZ53_06135	Addiction module antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
AJR23525.1	AJR25893.1	TZ53_07100	TZ53_21245	Addiction module antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Addiction module antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.827
AJR23528.1	AJR25893.1	TZ53_07115	TZ53_21245	Addiction module antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Addiction module antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.639
AJR24418.1	AJR25893.1	TZ53_12455	TZ53_21245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Addiction module antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
AJR25892.1	AJR25893.1	TZ53_21240	TZ53_21245	Stability determinant; Derived by automated computational analysis using gene prediction method: Protein Homology.	Addiction module antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
AJR25892.1	AJR25894.1	TZ53_21240	TZ53_21250	Stability determinant; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.549
AJR25892.1	AJR26553.1	TZ53_21240	TZ53_21235	Stability determinant; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.559
AJR25893.1	AJR22744.1	TZ53_21245	TZ53_02075	Addiction module antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.837
AJR25893.1	AJR23109.1	TZ53_21245	TZ53_04330	Addiction module antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.837
AJR25893.1	AJR23380.1	TZ53_21245	TZ53_06135	Addiction module antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.831
AJR25893.1	AJR23525.1	TZ53_21245	TZ53_07100	Addiction module antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Addiction module antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.827
AJR25893.1	AJR23528.1	TZ53_21245	TZ53_07115	Addiction module antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Addiction module antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.639
AJR25893.1	AJR24418.1	TZ53_21245	TZ53_12455	Addiction module antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
AJR25893.1	AJR25892.1	TZ53_21245	TZ53_21240	Addiction module antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Stability determinant; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975