AJR25904.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

AJR25904.1

Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)

Predicted Functional Partners:

AJR25905.1

0.967

AJR25665.1

0.797

AJR25902.1

0.795

AJR25903.1

0.757

AJR24766.1

0.514

secE

0.453

AJR22633.1

0.409

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22633.1	AJR25665.1	TZ53_01355	TZ53_19900	Disulfide bond formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Universal stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.713
AJR22633.1	AJR25904.1	TZ53_01355	TZ53_21310	Disulfide bond formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
AJR22633.1	AJR25905.1	TZ53_01355	TZ53_21315	Disulfide bond formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transmembrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
AJR22633.1	secE	TZ53_01355	TZ53_13985	Disulfide bond formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.	0.607
AJR24766.1	AJR25904.1	TZ53_14570	TZ53_21310	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.514
AJR24766.1	AJR25905.1	TZ53_14570	TZ53_21315	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transmembrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
AJR25665.1	AJR22633.1	TZ53_19900	TZ53_01355	Universal stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Disulfide bond formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.713
AJR25665.1	AJR25904.1	TZ53_19900	TZ53_21310	Universal stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.797
AJR25665.1	AJR25905.1	TZ53_19900	TZ53_21315	Universal stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transmembrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
AJR25665.1	secE	TZ53_19900	TZ53_13985	Universal stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.	0.600
AJR25902.1	AJR25903.1	TZ53_21300	TZ53_21305	Bacteriophage N4 adsorption protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
AJR25902.1	AJR25904.1	TZ53_21300	TZ53_21310	Bacteriophage N4 adsorption protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
AJR25902.1	AJR25905.1	TZ53_21300	TZ53_21315	Bacteriophage N4 adsorption protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transmembrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.806
AJR25903.1	AJR25902.1	TZ53_21305	TZ53_21300	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bacteriophage N4 adsorption protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
AJR25903.1	AJR25904.1	TZ53_21305	TZ53_21310	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.757
AJR25903.1	AJR25905.1	TZ53_21305	TZ53_21315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transmembrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.728
AJR25904.1	AJR22633.1	TZ53_21310	TZ53_01355	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Disulfide bond formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
AJR25904.1	AJR24766.1	TZ53_21310	TZ53_14570	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.514
AJR25904.1	AJR25665.1	TZ53_21310	TZ53_19900	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Universal stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.797
AJR25904.1	AJR25902.1	TZ53_21310	TZ53_21300	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bacteriophage N4 adsorption protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795