AJR25904.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJR25904.1

Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)

Predicted Functional Partners:

AJR25905.1

0.966

AJR25665.1

0.816

AJR25902.1

0.793

AJR25903.1

0.762

AJR24766.1

0.511

secE

0.453

AJR22633.1

0.409

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22633.1	AJR25665.1	TZ53_01355	TZ53_19900	Disulfide bond formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Universal stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.713
AJR22633.1	AJR25904.1	TZ53_01355	TZ53_21310	Disulfide bond formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
AJR22633.1	AJR25905.1	TZ53_01355	TZ53_21315	Disulfide bond formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transmembrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
AJR22633.1	secE	TZ53_01355	TZ53_13985	Disulfide bond formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.	0.573
AJR24766.1	AJR25902.1	TZ53_14570	TZ53_21300	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bacteriophage N4 adsorption protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
AJR24766.1	AJR25904.1	TZ53_14570	TZ53_21310	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
AJR24766.1	AJR25905.1	TZ53_14570	TZ53_21315	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transmembrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.532
AJR25665.1	AJR22633.1	TZ53_19900	TZ53_01355	Universal stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Disulfide bond formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.713
AJR25665.1	AJR25904.1	TZ53_19900	TZ53_21310	Universal stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.816
AJR25665.1	AJR25905.1	TZ53_19900	TZ53_21315	Universal stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transmembrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.815
AJR25665.1	secE	TZ53_19900	TZ53_13985	Universal stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.	0.619
AJR25902.1	AJR24766.1	TZ53_21300	TZ53_14570	Bacteriophage N4 adsorption protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
AJR25902.1	AJR25903.1	TZ53_21300	TZ53_21305	Bacteriophage N4 adsorption protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.860
AJR25902.1	AJR25904.1	TZ53_21300	TZ53_21310	Bacteriophage N4 adsorption protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
AJR25902.1	AJR25905.1	TZ53_21300	TZ53_21315	Bacteriophage N4 adsorption protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transmembrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.804
AJR25903.1	AJR25902.1	TZ53_21305	TZ53_21300	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bacteriophage N4 adsorption protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.860
AJR25903.1	AJR25904.1	TZ53_21305	TZ53_21310	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762
AJR25903.1	AJR25905.1	TZ53_21305	TZ53_21315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transmembrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762
AJR25904.1	AJR22633.1	TZ53_21310	TZ53_01355	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Disulfide bond formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
AJR25904.1	AJR24766.1	TZ53_21310	TZ53_14570	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511