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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR25905.1Transmembrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)    
Predicted Functional Partners:
AJR25904.1
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.967
AJR25902.1
Bacteriophage N4 adsorption protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.806
AJR25665.1
Universal stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.793
AJR25903.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.728
secE
Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.657
AJR26152.1
Ubiquinol-cytochrome C chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.641
AJR24955.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0262 family.
  
     0.608
AJR24725.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.594
AJR24321.1
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.547
AJR24766.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.535
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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