AJR25924.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AJR25924.1

Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)

Predicted Functional Partners:

AJR22782.1

0.972

AJR23510.1

0.950

AJR22781.1

0.939

AJR25920.1

0.927

AJR22780.1

0.924

AJR25922.1

0.917

AJR25921.1

0.899

AJR25919.1

0.882

AJR26236.1

0.786

AJR23634.1

0.781

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22780.1	AJR22781.1	TZ53_02345	TZ53_02350	Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999
AJR22780.1	AJR22782.1	TZ53_02345	TZ53_02355	Derived by automated computational analysis using gene prediction method: Protein Homology.	Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999
AJR22780.1	AJR23510.1	TZ53_02345	TZ53_06985	Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome C oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AJR22780.1	AJR23634.1	TZ53_02345	TZ53_07805	Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.	0.867
AJR22780.1	AJR25919.1	TZ53_02345	TZ53_21400	Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.828
AJR22780.1	AJR25920.1	TZ53_02345	TZ53_21405	Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.	0.832
AJR22780.1	AJR25921.1	TZ53_02345	TZ53_21410	Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
AJR22780.1	AJR25922.1	TZ53_02345	TZ53_21415	Derived by automated computational analysis using gene prediction method: Protein Homology.	Bb3-type cytochrome oxidase subunit IV; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
AJR22780.1	AJR25924.1	TZ53_02345	TZ53_21425	Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
AJR22781.1	AJR22780.1	TZ53_02350	TZ53_02345	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22781.1	AJR22782.1	TZ53_02350	TZ53_02355	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999
AJR22781.1	AJR23510.1	TZ53_02350	TZ53_06985	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome C oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22781.1	AJR23634.1	TZ53_02350	TZ53_07805	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.	0.908
AJR22781.1	AJR25919.1	TZ53_02350	TZ53_21400	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
AJR22781.1	AJR25920.1	TZ53_02350	TZ53_21405	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.	0.990
AJR22781.1	AJR25921.1	TZ53_02350	TZ53_21410	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
AJR22781.1	AJR25922.1	TZ53_02350	TZ53_21415	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Bb3-type cytochrome oxidase subunit IV; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
AJR22781.1	AJR25924.1	TZ53_02350	TZ53_21425	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939
AJR22781.1	AJR26236.1	TZ53_02350	TZ53_06995	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
AJR22782.1	AJR22780.1	TZ53_02355	TZ53_02345	Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999