Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJR25926.1TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)    
Predicted Functional Partners:
AJR25927.1
Sodium:proton antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.
       0.773
AJR24188.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.565
AJR25600.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.505
AJR22786.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.472
AJR23926.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.463
AJR24360.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.442
AJR23890.1
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.437
AJR26473.1
Lauroyl acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.428
AJR26516.1
Beta-glucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.412
AJR23034.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.408
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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