AJR25939.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJR25939.1

Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)

Predicted Functional Partners:

AJR25937.1

0.877

AJR25938.1

0.846

AJR26562.1

0.786

AJR25985.1

0.781

AJR22869.1

0.778

AJR25763.1

0.759

AJR25961.1

0.554

AJR25762.1

0.533

AJR24328.1

0.475

AJR25965.1

0.467

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22869.1	AJR24328.1	TZ53_02885	TZ53_11910	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
AJR22869.1	AJR25762.1	TZ53_02885	TZ53_20450	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma 70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.510
AJR22869.1	AJR25763.1	TZ53_02885	TZ53_20460	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phyllosphere-induced regulator PhyR; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
AJR22869.1	AJR25937.1	TZ53_02885	TZ53_21500	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
AJR22869.1	AJR25938.1	TZ53_02885	TZ53_21505	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cyclic nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.451
AJR22869.1	AJR25939.1	TZ53_02885	TZ53_21510	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
AJR22869.1	AJR25961.1	TZ53_02885	TZ53_21645	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
AJR22869.1	AJR25965.1	TZ53_02885	TZ53_21665	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
AJR22869.1	AJR26562.1	TZ53_02885	TZ53_21545	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853
AJR24328.1	AJR22869.1	TZ53_11910	TZ53_02885	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
AJR24328.1	AJR25939.1	TZ53_11910	TZ53_21510	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
AJR24328.1	AJR25985.1	TZ53_11910	TZ53_21815	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.519
AJR24328.1	AJR26562.1	TZ53_11910	TZ53_21545	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
AJR25762.1	AJR22869.1	TZ53_20450	TZ53_02885	RNA polymerase sigma 70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.510
AJR25762.1	AJR25763.1	TZ53_20450	TZ53_20460	RNA polymerase sigma 70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Phyllosphere-induced regulator PhyR; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
AJR25762.1	AJR25939.1	TZ53_20450	TZ53_21510	RNA polymerase sigma 70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.533
AJR25762.1	AJR26562.1	TZ53_20450	TZ53_21545	RNA polymerase sigma 70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.526
AJR25763.1	AJR22869.1	TZ53_20460	TZ53_02885	Phyllosphere-induced regulator PhyR; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
AJR25763.1	AJR25762.1	TZ53_20460	TZ53_20450	Phyllosphere-induced regulator PhyR; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma 70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.927
AJR25763.1	AJR25937.1	TZ53_20460	TZ53_21500	Phyllosphere-induced regulator PhyR; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.730