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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR26566.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)    
Predicted Functional Partners:
AJR25974.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.486
AJR25973.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.450
argD
Acetylornithine aminotransferase; Catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
  
 0.440
AJR24109.1
Ribonuclease BN; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.428
AJR23615.1
General stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.419
AJR24472.1
Pyridoxamine 5'-phosphate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.419
AJR25649.1
General stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.419
AJR24724.1
CrtK protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.418
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
  0.411
AJR24644.1
General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.405
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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