STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJR25992.1Pilus assembly protein PapD; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)    
Predicted Functional Partners:
AJR26573.1
Pilus assembly protein PapC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
AJR26572.1
Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.996
AJR25993.1
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.992
AJR23974.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.991
AJR24696.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.985
AJR24698.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.984
AJR24697.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.919
AJR26367.1
2'-5' RNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.635
AJR26448.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.540
AJR26267.1
Peptidase S33; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.480
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.