AJR26004.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR26004.1

Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)

Predicted Functional Partners:

AJR25083.1

0.948

AJR25110.1

0.923

AJR25972.1

0.915

AJR25878.1

0.911

AJR24591.1

0.879

AJR24699.1

0.866

AJR22638.1

0.865

AJR24768.1

0.855

AJR26350.1

0.853

AJR23677.1

0.850

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22638.1	AJR23677.1	TZ53_01390	TZ53_08075	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrogen fixation protein FixL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
AJR22638.1	AJR24591.1	TZ53_01390	TZ53_13525	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Response regulator PleD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
AJR22638.1	AJR24699.1	TZ53_01390	TZ53_14155	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
AJR22638.1	AJR24768.1	TZ53_01390	TZ53_14585	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.687
AJR22638.1	AJR25110.1	TZ53_01390	TZ53_16640	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.487
AJR22638.1	AJR25972.1	TZ53_01390	TZ53_21710	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
AJR22638.1	AJR26004.1	TZ53_01390	TZ53_21945	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.865
AJR22638.1	AJR26350.1	TZ53_01390	TZ53_11930	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
AJR23677.1	AJR22638.1	TZ53_08075	TZ53_01390	Nitrogen fixation protein FixL; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
AJR23677.1	AJR24591.1	TZ53_08075	TZ53_13525	Nitrogen fixation protein FixL; Derived by automated computational analysis using gene prediction method: Protein Homology.	Response regulator PleD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
AJR23677.1	AJR24699.1	TZ53_08075	TZ53_14155	Nitrogen fixation protein FixL; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
AJR23677.1	AJR24768.1	TZ53_08075	TZ53_14585	Nitrogen fixation protein FixL; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
AJR23677.1	AJR25083.1	TZ53_08075	TZ53_16470	Nitrogen fixation protein FixL; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.680
AJR23677.1	AJR25110.1	TZ53_08075	TZ53_16640	Nitrogen fixation protein FixL; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.844
AJR23677.1	AJR25878.1	TZ53_08075	TZ53_21165	Nitrogen fixation protein FixL; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
AJR23677.1	AJR25972.1	TZ53_08075	TZ53_21710	Nitrogen fixation protein FixL; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
AJR23677.1	AJR26004.1	TZ53_08075	TZ53_21945	Nitrogen fixation protein FixL; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.850
AJR23677.1	AJR26350.1	TZ53_08075	TZ53_11930	Nitrogen fixation protein FixL; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
AJR24591.1	AJR22638.1	TZ53_13525	TZ53_01390	Response regulator PleD; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
AJR24591.1	AJR23677.1	TZ53_13525	TZ53_08075	Response regulator PleD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrogen fixation protein FixL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705