AJR26027.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR26027.1

Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)

Predicted Functional Partners:

AJR26029.1

0.990

AJR25878.1

0.982

AJR26028.1

0.977

AJR23903.1

0.971

AJR22886.1

0.968

AJR23423.1

0.968

AJR25119.1

0.965

AJR23906.1

0.952

AJR23907.1

0.952

AJR23900.1

0.940

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22886.1	AJR23900.1	TZ53_03010	TZ53_09355	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheX; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619
AJR22886.1	AJR23903.1	TZ53_03010	TZ53_09370	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
AJR22886.1	AJR23906.1	TZ53_03010	TZ53_09385	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
AJR22886.1	AJR25878.1	TZ53_03010	TZ53_21165	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
AJR22886.1	AJR26027.1	TZ53_03010	TZ53_22065	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.968
AJR22886.1	AJR26028.1	TZ53_03010	TZ53_22070	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
AJR22886.1	AJR26029.1	TZ53_03010	TZ53_22075	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AJR23423.1	AJR23900.1	TZ53_06460	TZ53_09355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheX; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.656
AJR23423.1	AJR23903.1	TZ53_06460	TZ53_09370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
AJR23423.1	AJR23906.1	TZ53_06460	TZ53_09385	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.960
AJR23423.1	AJR23907.1	TZ53_06460	TZ53_09390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
AJR23423.1	AJR25878.1	TZ53_06460	TZ53_21165	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
AJR23423.1	AJR26027.1	TZ53_06460	TZ53_22065	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.968
AJR23423.1	AJR26028.1	TZ53_06460	TZ53_22070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954
AJR23423.1	AJR26029.1	TZ53_06460	TZ53_22075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AJR23900.1	AJR22886.1	TZ53_09355	TZ53_03010	Chemotaxis protein CheX; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619
AJR23900.1	AJR23423.1	TZ53_09355	TZ53_06460	Chemotaxis protein CheX; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.656
AJR23900.1	AJR23903.1	TZ53_09355	TZ53_09370	Chemotaxis protein CheX; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
AJR23900.1	AJR23906.1	TZ53_09355	TZ53_09385	Chemotaxis protein CheX; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
AJR23900.1	AJR23907.1	TZ53_09355	TZ53_09390	Chemotaxis protein CheX; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912