AJR26033.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJR26033.1

Methanol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)

Predicted Functional Partners:

AJR26032.1

0.966

AJR26034.1

0.953

AJR23510.1

0.838

AJR26035.1

0.804

AJR22781.1

0.736

mscL

0.662

AJR23526.1

0.644

AJR23095.1

0.612

AJR23096.1

0.612

AJR23094.1

0.607

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22781.1	AJR23510.1	TZ53_02350	TZ53_06985	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome C oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22781.1	AJR26033.1	TZ53_02350	TZ53_22095	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Methanol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
AJR23094.1	AJR23095.1	TZ53_04240	TZ53_04245	SPFH domain/Band 7 family protein 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
AJR23094.1	AJR23096.1	TZ53_04240	TZ53_04250	SPFH domain/Band 7 family protein 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
AJR23094.1	AJR26033.1	TZ53_04240	TZ53_22095	SPFH domain/Band 7 family protein 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methanol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.607
AJR23095.1	AJR23094.1	TZ53_04245	TZ53_04240	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	SPFH domain/Band 7 family protein 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
AJR23095.1	AJR23096.1	TZ53_04245	TZ53_04250	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.986
AJR23095.1	AJR26033.1	TZ53_04245	TZ53_22095	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methanol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.612
AJR23096.1	AJR23094.1	TZ53_04250	TZ53_04240	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	SPFH domain/Band 7 family protein 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
AJR23096.1	AJR23095.1	TZ53_04250	TZ53_04245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.986
AJR23096.1	AJR26033.1	TZ53_04250	TZ53_22095	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methanol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.612
AJR23510.1	AJR22781.1	TZ53_06985	TZ53_02350	Cytochrome C oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999
AJR23510.1	AJR26033.1	TZ53_06985	TZ53_22095	Cytochrome C oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methanol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.838
AJR23526.1	AJR26033.1	TZ53_07105	TZ53_22095	Toxin MazF; ChpA; endoribonuclease; toxin of the MazF-MazE (ChpA-ChpR) toxin-antitoxin system; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methanol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.644
AJR26032.1	AJR26033.1	TZ53_22090	TZ53_22095	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methanol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
AJR26032.1	AJR26034.1	TZ53_22090	TZ53_22100	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.965
AJR26032.1	AJR26035.1	TZ53_22090	TZ53_22105	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.860
AJR26032.1	mscL	TZ53_22090	TZ53_22085	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mechanosensitive ion channel protein MscL; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.	0.753
AJR26033.1	AJR22781.1	TZ53_22095	TZ53_02350	Methanol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.736
AJR26033.1	AJR23094.1	TZ53_22095	TZ53_04240	Methanol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	SPFH domain/Band 7 family protein 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.607