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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR26049.1Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (434 aa)    
Predicted Functional Partners:
AJR23224.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.702
AJR22777.1
Sugar hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.697
AJR26559.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.640
AJR26048.1
Aldose epimerase; Converts alpha-aldose to the beta-anomer.
       0.557
AJR26047.1
Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.543
AJR25932.1
Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.540
AJR25928.1
Signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.484
AJR23517.1
Hexuronate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.478
AJR23646.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.472
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
  
  
 0.461
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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