STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS53397.1Serine/threonine-protein kinase HipA. (449 aa)    
Predicted Functional Partners:
SIS53369.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
   
 
 0.968
SIT13409.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
   
 
 0.867
SIT18452.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
   
 
 0.867
SIT07060.1
Helix-turn-helix.
 
 
 
 0.747
SIS53766.1
Transcriptional regulator, XRE family.
   
 
 0.643
SIS64130.1
Helix-turn-helix domain-containing protein.
   
 
 0.643
SIS76779.1
Hypothetical protein.
   
 
 0.643
SIT09489.1
Helix-turn-helix domain-containing protein.
   
 
 0.643
SIS59010.1
Hypothetical protein.
  
     0.551
SIS55055.1
Hypothetical protein.
  
     0.549
Your Current Organism:
Oleibacter marinus
NCBI taxonomy Id: 484498
Other names: BTCC B-675, DSM 24913, NBRC 105760, O. marinus, Oceanobacter sp. 1O14, Oceanobacter sp. 1O18, Oceanobacter sp. 2O1, Oleibacter marinus Teramoto et al. 2011, strain 2O1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.