STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS55797.1YKOF-related Family. (88 aa)    
Predicted Functional Partners:
SIS55771.1
Nicotinamide mononucleotide transporter.
 
     0.899
SIS55823.1
Outer membrane receptor proteins, mostly Fe transport.
 
     0.889
SIS55744.1
Thiamine kinase.
 
     0.776
SIS94131.1
Outer membrane protein.
  
     0.681
SIS45070.1
TIGR03545 family protein.
  
     0.608
SIS82955.1
TonB dependent receptor.
  
     0.475
SIS49020.1
Outer membrane protein (porin).
  
     0.461
SIS43902.1
Tetratricopeptide repeat-containing protein.
  
     0.455
SIS45217.1
Hypothetical protein.
  
     0.452
SIT16391.1
Hypothetical protein.
  
     0.420
Your Current Organism:
Oleibacter marinus
NCBI taxonomy Id: 484498
Other names: BTCC B-675, DSM 24913, NBRC 105760, O. marinus, Oceanobacter sp. 1O14, Oceanobacter sp. 1O18, Oceanobacter sp. 2O1, Oleibacter marinus Teramoto et al. 2011, strain 2O1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.