STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS63662.1Allantoin racemase. (247 aa)    
Predicted Functional Partners:
SIS63707.1
Putative urate catabolism protein.
 
  
  0.955
SIS63640.1
Nucleobase:cation symporter-1, NCS1 family.
 
     0.857
SIS63726.1
Nucleobase:cation symporter-1, NCS1 family.
 
     0.805
SIS63616.1
Transcriptional regulator, GntR family.
 
     0.726
SIT19874.1
Dihydroorotase.
   
  0.660
SIS63683.1
Outer membrane protein (porin).
       0.623
alc
Allantoicase; Belongs to the allantoicase family.
 
  
  0.567
SIS63771.1
Ureidoglycolate lyase.
 
     0.541
SIS99936.1
Phosphoserine phosphatase.
 
      0.528
SIT04144.1
Dihydroorotase.
    
  0.522
Your Current Organism:
Oleibacter marinus
NCBI taxonomy Id: 484498
Other names: BTCC B-675, DSM 24913, NBRC 105760, O. marinus, Oceanobacter sp. 1O14, Oceanobacter sp. 1O18, Oceanobacter sp. 2O1, Oleibacter marinus Teramoto et al. 2011, strain 2O1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.