STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS90456.1Transcriptional regulator, CopG family; Transcriptional regulator. (148 aa)    
Predicted Functional Partners:
SIS90407.1
NitT/TauT family transport system ATP-binding protein.
 
     0.821
SIS90389.1
NitT/TauT family transport system permease protein.
 
     0.806
SIS90443.1
Glutamine synthetase.
 
     0.759
SIS90425.1
Creatinine amidohydrolase.
 
     0.740
SIS90371.1
NitT/TauT family transport system substrate-binding protein.
 
     0.679
SIS90480.1
Hypothetical protein.
       0.486
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
     
 0.481
SIS90500.1
Cytochrome c peroxidase.
       0.441
SIS42664.1
Oxaloacetate decarboxylase, alpha subunit.
    
  0.421
Your Current Organism:
Oleibacter marinus
NCBI taxonomy Id: 484498
Other names: BTCC B-675, DSM 24913, NBRC 105760, O. marinus, Oceanobacter sp. 1O14, Oceanobacter sp. 1O18, Oceanobacter sp. 2O1, Oleibacter marinus Teramoto et al. 2011, strain 2O1
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