STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT13579.1Type IV secretory pathway, VirD2 components (relaxase). (649 aa)    
Predicted Functional Partners:
SIT13530.1
Plasmid segregation centromere-binding protein ParG.
     0.943
SIT13563.1
Conjugative transfer signal peptidase TraF.
     0.941
SIT13547.1
Protein of unknown function.
     0.939
SIT13513.1
Plasmid segregation oscillating ATPase ParF.
     0.924
SIT14146.1
Type IV secretion system protein VirB4.
 
   
 0.814
SIT14061.1
Type IV secretion system protein VirD4.
 
   
 0.805
SIT13465.1
Helix-turn-helix domain-containing protein.
 
     0.798
SIT14077.1
Hypothetical protein.
 
     0.798
SIT14163.1
P-type conjugative transfer protein TrbJ.
 
     0.798
SIT14219.1
Type IV secretion system protein VirB9.
 
     0.798
Your Current Organism:
Oleibacter marinus
NCBI taxonomy Id: 484498
Other names: BTCC B-675, DSM 24913, NBRC 105760, O. marinus, Oceanobacter sp. 1O14, Oceanobacter sp. 1O18, Oceanobacter sp. 2O1, Oleibacter marinus Teramoto et al. 2011, strain 2O1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.