STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT17200.1Response regulator c-di-GMP phosphodiesterase, RpfG family, contains REC and HD-GYP domains. (443 aa)    
Predicted Functional Partners:
SIT08545.1
PAS domain S-box-containing protein.
 0.986
SIT17212.1
Signal transduction histidine kinase.
 
 0.961
SIS52694.1
PAS domain S-box-containing protein.
 0.940
SIS98251.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.903
SIT18965.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
 0.879
SIT08484.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 0.868
SIS84412.1
Flagellar motor switch protein FliG.
  
    0.855
SIS74307.1
Histidine kinase-like ATPase domain-containing protein.
 
 0.852
SIS77044.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
 0.851
SIS45049.1
Signal transduction histidine kinase.
 
 0.849
Your Current Organism:
Oleibacter marinus
NCBI taxonomy Id: 484498
Other names: BTCC B-675, DSM 24913, NBRC 105760, O. marinus, Oceanobacter sp. 1O14, Oceanobacter sp. 1O18, Oceanobacter sp. 2O1, Oleibacter marinus Teramoto et al. 2011, strain 2O1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.