STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SNX4_2Intercellular trafficking and secretion. (271 aa)    
Predicted Functional Partners:
ATG20_1
Autophagy-protein 20.
   
 0.901
ATG20_2
Autophagy-protein 20.
   
 0.901
VPS26BL
Vacuolar protein sorting-associated protein 26B-like protein.
   
 
 0.727
VPS35_2
Vacuolar protein sorting-associated protein 35.
   
 
 0.711
VPS35_1
Vacuolar protein sorting-associated protein 35.
   
 
 0.711
VPS35_3
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.711
BLOC1S2
Bioproteinsis of lysosome-organelles complex 1 subunit 2.
    
 
 0.710
VPS17_2
Vacuolar protein sorting-associated protein 17.
    
 
 0.667
VPS17_1
Vacuolar protein sorting-associated protein 17.
    
 
 0.667
ATG1
Serine/threonine-protein kinase.
   
 
 0.635
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.