CU098_002224 protein (Rhizopus stolonifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CU098_002224

Uncharacterized protein. (249 aa)

Predicted Functional Partners:

CRP79

0.829

NEDD8

0.759

CU098_012679

0.759

UFD4_1

0.667

KEX2_3

0.645

KEX2_1

0.645

KEX2_4

0.645

KEX2_2

0.645

MMS2_2

0.624

MMS2_1

0.624

Your Current Organism:

Rhizopus stolonifer

NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRP79	CU098_002224	A0A367J4J6	A0A367IIQ9	Poly(A) binding protein Crp79.	Uncharacterized protein.	0.829
CRP79	CU098_012679	A0A367J4J6	A0A367KM78	Poly(A) binding protein Crp79.	Ubiquitin-like domain-containing protein.	0.990
CRP79	MMS2_1	A0A367J4J6	A0A367JGN5	Poly(A) binding protein Crp79.	E2 ubiquitin-conjugating protein mms2.	0.984
CRP79	MMS2_2	A0A367J4J6	A0A367JCV9	Poly(A) binding protein Crp79.	E2 ubiquitin-conjugating protein mms2.	0.984
CRP79	NEDD8	A0A367J4J6	A0A367KC46	Poly(A) binding protein Crp79.	Nedd8-conjugating enzyme UBE2F.	0.993
CRP79	UFD4_1	A0A367J4J6	A0A367JVG6	Poly(A) binding protein Crp79.	Ubiquitin fusion degradation protein 4.	0.962
CU098_002224	CRP79	A0A367IIQ9	A0A367J4J6	Uncharacterized protein.	Poly(A) binding protein Crp79.	0.829
CU098_002224	CU098_012679	A0A367IIQ9	A0A367KM78	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.759
CU098_002224	KEX2_1	A0A367IIQ9	A0A367JKY6	Uncharacterized protein.	Pheromone processing endoprotease; Belongs to the peptidase S8 family.	0.645
CU098_002224	KEX2_2	A0A367IIQ9	A0A367KT98	Uncharacterized protein.	Pheromone processing endoprotease; Belongs to the peptidase S8 family.	0.645
CU098_002224	KEX2_3	A0A367IIQ9	A0A367ILC0	Uncharacterized protein.	Pheromone processing endoprotease.	0.645
CU098_002224	KEX2_4	A0A367IIQ9	A0A367KHM1	Uncharacterized protein.	Pheromone processing endoprotease; Belongs to the peptidase S8 family.	0.645
CU098_002224	MMS2_1	A0A367IIQ9	A0A367JGN5	Uncharacterized protein.	E2 ubiquitin-conjugating protein mms2.	0.624
CU098_002224	MMS2_2	A0A367IIQ9	A0A367JCV9	Uncharacterized protein.	E2 ubiquitin-conjugating protein mms2.	0.624
CU098_002224	NEDD8	A0A367IIQ9	A0A367KC46	Uncharacterized protein.	Nedd8-conjugating enzyme UBE2F.	0.759
CU098_002224	UFD4_1	A0A367IIQ9	A0A367JVG6	Uncharacterized protein.	Ubiquitin fusion degradation protein 4.	0.667
CU098_012679	CRP79	A0A367KM78	A0A367J4J6	Ubiquitin-like domain-containing protein.	Poly(A) binding protein Crp79.	0.990
CU098_012679	CU098_002224	A0A367KM78	A0A367IIQ9	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.759
CU098_012679	MMS2_1	A0A367KM78	A0A367JGN5	Ubiquitin-like domain-containing protein.	E2 ubiquitin-conjugating protein mms2.	0.976
CU098_012679	MMS2_2	A0A367KM78	A0A367JCV9	Ubiquitin-like domain-containing protein.	E2 ubiquitin-conjugating protein mms2.	0.976