STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CU098_002782Uncharacterized protein. (387 aa)    
Predicted Functional Partners:
CU098_000798
ABC transporter domain-containing protein.
 
     0.947
CU098_009233
Uncharacterized protein.
 
    
0.920
CU098_008715
Uncharacterized protein.
    
 0.852
UFD4_1
Ubiquitin fusion degradation protein 4.
     
 0.794
PPP4C
Serine/threonine-protein phosphatase 4 catalytic subunit.
    
 
 0.697
COX15_2
Protein required for the hydroxylation of heme O to form heme A, cox15.
    
 0.596
COX15_1
Protein required for the hydroxylation of heme O to form heme A, cox15.
    
 0.546
CU098_004602
Uncharacterized protein.
  
     0.509
ARO1_1
3-phosphoshikimate 1-carboxyvinyltransferase; Belongs to the EPSP synthase family.
     
  0.487
ARO1_2
3-dehydroquinate dehydratase (3-dehydroquinase).
     
  0.487
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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