STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BOS1Protein transport protein bos1. (182 aa)    
Predicted Functional Partners:
SLY1
Vesicle trafficking between the ER and Golgi; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.997
CU098_002481
Uso1_p115_C domain-containing protein.
    
 0.995
SEC22_2
SNAP receptor; Belongs to the synaptobrevin family.
    
 0.989
SEC22_1
SNAP receptor; Belongs to the synaptobrevin family.
    
 0.989
CU098_000011
Uncharacterized protein.
    
 0.989
SEC23
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.963
SEC13
GTPase-activating protein S13; Belongs to the WD repeat SEC13 family.
   
 
 0.951
COG3
Golgi transport complex subunit 3.
    
 0.937
COG1
Golgi transport complex subunit 1.
     
 0.928
COG8
Conserved oligomeric Golgi complex component.
     
 0.926
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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