STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CU098_004171G_PROTEIN_RECEP_F2_4 domain-containing protein. (300 aa)    
Predicted Functional Partners:
CU098_000858
Uncharacterized protein.
    
 0.885
CU098_006100
Zn(2)-C6 fungal-type domain-containing protein.
    
 0.885
CU098_007948
Zn(2)-C6 fungal-type domain-containing protein.
    
 0.885
CSNK1A1_2
Casein kinase I isoform alpha; Belongs to the protein kinase superfamily.
    
 0.884
NEDD8
Nedd8-conjugating enzyme UBE2F.
    
  0.812
CU098_012679
Ubiquitin-like domain-containing protein.
    
  0.812
CU098_005645
Uncharacterized protein.
     
  0.787
CU098_003610
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
    
 0.747
CU098_005923
Protein kinase domain-containing protein.
    
 0.747
PKA1_1
Camp-dependent protein kinase catalytic subunit; Belongs to the protein kinase superfamily.
    
 0.747
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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