STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DUS4L_2tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like protein. (196 aa)    
Predicted Functional Partners:
CU098_010943
AA_TRNA_LIGASE_II domain-containing protein.
  
 
 0.554
CU098_001028
AA_TRNA_LIGASE_II domain-containing protein.
  
 
 0.536
CU098_001791
AA_TRNA_LIGASE_II domain-containing protein.
  
 
 0.536
TRM1
tRNA (guanine(26)-N(2))-dimethyltransferase.
   
 
 0.498
PAN6
Pantothenate synthase.
  
    0.478
TRM8_2
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
 
 0.471
TRM8_1
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
 
 0.471
TSR3
Ribosome bioproteinsis protein tsr3.
   
  
 0.449
CU098_011878
Formyl_trans_N domain-containing protein.
  
 
  0.440
PUS3
tRNA pseudouridine synthase 3.
  
 
 0.433
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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