STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRP46Pre-mRNA-splicing factor prp46. (414 aa)    
Predicted Functional Partners:
CU098_006668
WD_REPEATS_REGION domain-containing protein.
   
0.998
BCAS2
Pre-mRNA-splicing factor SPF27.
   
 0.998
CU098_002532
DUF1716 domain-containing protein.
   
 0.997
CU098_009239
Uncharacterized protein.
   
 0.997
CEF1_1
Pre-mRNA-splicing factor cef1.
   
 0.990
CEF1_2
Pre-mRNA-splicing factor cef1.
   
 0.990
CU098_007111
Uncharacterized protein.
    
 0.987
BUD31
Component of the SF3b subcomplex of the U2 snRNP.
   
 
 0.973
RBM22
RNA binding motif protein 22.
   
 
 0.972
PRP21
SF3a splicing factor complex subunit.
   
 
 0.971
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.