STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CU098_003457RING-type domain-containing protein. (343 aa)    
Predicted Functional Partners:
CU098_005201
OTU domain-containing protein.
    
 0.681
CRP79
Poly(A) binding protein Crp79.
    
  0.516
DOA4_3
Ubiquitin-specific protease doa4.
    
  0.451
DOA4_2
Ubiquitin carboxyl-terminal hydrolase.
    
  0.451
CU098_009598
Ubiquitin carboxyl-terminal hydrolase.
    
  0.451
USP30
Ubiquitin carboxyl-terminal hydrolase.
    
  0.451
DOA4_1
Ubiquitin-specific protease doa4; Belongs to the peptidase C19 family.
    
  0.451
DOA4_4
Ubiquitin carboxyl-terminal hydrolase.
    
  0.451
RPS27A_1
Ribosomal 40S subunit protein S27A.
    
  0.400
RPS27A_2
Ribosomal 40S subunit protein S27A.
    
  0.400
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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