STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CU098_006433Uncharacterized protein. (148 aa)    
Predicted Functional Partners:
ATG1
Serine/threonine-protein kinase.
    
  0.648
CU098_008444
Uncharacterized protein.
    
 0.631
CU098_009173
DNA ligase.
    
 0.630
CU098_003509
GRIP domain-containing protein.
    
 0.626
CU098_008347
Uncharacterized protein.
    
 0.588
CU098_008578
WD_REPEATS_REGION domain-containing protein.
    
 0.575
CU098_006152
WD_REPEATS_REGION domain-containing protein.
    
 0.575
ATG9
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
    
  0.564
CU098_000611
Uncharacterized protein.
    
 0.564
GPLD1
Glycosylphosphatidylinositol specific phospholipase D1.
    
 0.564
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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