CU098_006156 protein (Rhizopus stolonifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CU098_006156

DH domain-containing protein. (196 aa)

Predicted Functional Partners:

VPS15_4

0.717

CU098_007075

0.664

CU098_003081

0.664

CU098_003643

0.664

RAC1_2

0.639

CU098_003158

0.639

CU098_007832

0.639

CU098_005027

0.639

RAC1_1

0.639

RHO1_4

0.639

Your Current Organism:

Rhizopus stolonifer

NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CU098_003081	CU098_003158	A0A367JLF0	A0A367IMF1	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.427
CU098_003081	CU098_005027	A0A367JLF0	A0A367IQ98	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.427
CU098_003081	CU098_006156	A0A367JLF0	A0A367IL96	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	DH domain-containing protein.	0.664
CU098_003081	CU098_007832	A0A367JLF0	A0A367IMW9	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Myb-like domain-containing protein.	0.427
CU098_003081	RAC1_1	A0A367JLF0	A0A367IV43	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Rho GTPase protein rac1.	0.457
CU098_003081	RAC1_2	A0A367JLF0	A0A367IKG7	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Rho GTPase protein rac1.	0.457
CU098_003081	RHO1_4	A0A367JLF0	A0A367IVZ7	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	GTP-binding protein Rho1.	0.490
CU098_003081	VPS15_4	A0A367JLF0	A0A367KK80	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Serine/threonine-protein kinase.	0.579
CU098_003158	CU098_003081	A0A367IMF1	A0A367JLF0	Uncharacterized protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.427
CU098_003158	CU098_003643	A0A367IMF1	A0A367KQ56	Uncharacterized protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.427
CU098_003158	CU098_006156	A0A367IMF1	A0A367IL96	Uncharacterized protein.	DH domain-containing protein.	0.639
CU098_003158	CU098_007075	A0A367IMF1	A0A367JET8	Uncharacterized protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.427
CU098_003643	CU098_003158	A0A367KQ56	A0A367IMF1	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.427
CU098_003643	CU098_005027	A0A367KQ56	A0A367IQ98	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.427
CU098_003643	CU098_006156	A0A367KQ56	A0A367IL96	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	DH domain-containing protein.	0.664
CU098_003643	CU098_007832	A0A367KQ56	A0A367IMW9	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Myb-like domain-containing protein.	0.427
CU098_003643	RAC1_1	A0A367KQ56	A0A367IV43	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Rho GTPase protein rac1.	0.457
CU098_003643	RAC1_2	A0A367KQ56	A0A367IKG7	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Rho GTPase protein rac1.	0.457
CU098_003643	RHO1_4	A0A367KQ56	A0A367IVZ7	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	GTP-binding protein Rho1.	0.490
CU098_003643	VPS15_4	A0A367KQ56	A0A367KK80	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Serine/threonine-protein kinase.	0.579