STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CU098_004331PUM-HD domain-containing protein. (245 aa)    
Predicted Functional Partners:
CNOT7
CCR4-NOT transcription complex subunit 7.
    
 
 0.739
RBM22
RNA binding motif protein 22.
     
 0.672
PRP45_2
mRNA splicing protein.
    
  0.609
PRP45_1
mRNA splicing protein.
    
  0.609
CU098_003387
Uncharacterized protein.
    
 
 0.595
CRNKL1
Crooked neck-like protein 1.
    
  0.578
CLF1
NineTeen Complex (NTC) component.
    
  0.578
PUF6
Pumilio domain member 6.
    
 
 0.557
DHH1_1
DExD/H-box ATP-dependent RNA helicase dhh1.
    
 
 0.536
DHH1_2
DExD/H-box ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.
    
 
 0.536
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.