CU098_001821 protein (Rhizopus stolonifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CU098_001821

Uncharacterized protein. (430 aa)

Predicted Functional Partners:

CU098_002444

0.847

CU098_005029

0.847

GUT2_2

0.831

GUT2_1

0.831

CU098_013107

0.822

CU098_006525

0.819

CU098_000532

0.803

CU098_006681

0.803

CU098_010448

0.803

CU098_011002

0.803

Your Current Organism:

Rhizopus stolonifer

NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CU098_000532	CU098_001821	A0A367IN20	A0A367IM52	Uncharacterized protein.	Uncharacterized protein.	0.803
CU098_000532	CU098_002444	A0A367IN20	A0A367IP60	Uncharacterized protein.	Uncharacterized protein.	0.688
CU098_000532	CU098_005029	A0A367IN20	A0A367IQ92	Uncharacterized protein.	Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.	0.688
CU098_000532	CU098_013107	A0A367IN20	A0A367KQR6	Uncharacterized protein.	Uncharacterized protein.	0.676
CU098_001821	CU098_000532	A0A367IM52	A0A367IN20	Uncharacterized protein.	Uncharacterized protein.	0.803
CU098_001821	CU098_002444	A0A367IM52	A0A367IP60	Uncharacterized protein.	Uncharacterized protein.	0.847
CU098_001821	CU098_005029	A0A367IM52	A0A367IQ92	Uncharacterized protein.	Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.	0.847
CU098_001821	CU098_006525	A0A367IM52	A0A367KKN2	Uncharacterized protein.	Gluconokinase; Belongs to the gluconokinase GntK/GntV family.	0.819
CU098_001821	CU098_006681	A0A367IM52	A0A367J3M0	Uncharacterized protein.	Aldolase_II domain-containing protein.	0.803
CU098_001821	CU098_010448	A0A367IM52	A0A367K1Z2	Uncharacterized protein.	Uncharacterized protein.	0.803
CU098_001821	CU098_011002	A0A367IM52	A0A367KHT9	Uncharacterized protein.	Aldolase_II domain-containing protein.	0.803
CU098_001821	CU098_013107	A0A367IM52	A0A367KQR6	Uncharacterized protein.	Uncharacterized protein.	0.822
CU098_001821	GUT2_1	A0A367IM52	A0A367IW22	Uncharacterized protein.	Mitochondrial glycerol-3-phosphate dehydrogenase.	0.831
CU098_001821	GUT2_2	A0A367IM52	A0A367IKV8	Uncharacterized protein.	Mitochondrial glycerol-3-phosphate dehydrogenase.	0.831
CU098_002444	CU098_000532	A0A367IP60	A0A367IN20	Uncharacterized protein.	Uncharacterized protein.	0.688
CU098_002444	CU098_001821	A0A367IP60	A0A367IM52	Uncharacterized protein.	Uncharacterized protein.	0.847
CU098_002444	CU098_006525	A0A367IP60	A0A367KKN2	Uncharacterized protein.	Gluconokinase; Belongs to the gluconokinase GntK/GntV family.	0.824
CU098_002444	CU098_006681	A0A367IP60	A0A367J3M0	Uncharacterized protein.	Aldolase_II domain-containing protein.	0.688
CU098_002444	CU098_010448	A0A367IP60	A0A367K1Z2	Uncharacterized protein.	Uncharacterized protein.	0.688
CU098_002444	CU098_011002	A0A367IP60	A0A367KHT9	Uncharacterized protein.	Aldolase_II domain-containing protein.	0.688