CU098_006592 protein (Rhizopus stolonifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CU098_006592

Methyltransf_11 domain-containing protein. (183 aa)

Predicted Functional Partners:

CU098_011687

0.934

PHO81_2

0.788

PHO81_1

0.788

NOB1

0.701

GDE1_2

0.662

GDE1_1

0.662

DRS1_1

0.576

DRS1_2

0.576

CU098_001341

0.552

CU098_001077

0.552

Your Current Organism:

Rhizopus stolonifer

NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CU098_001077	CU098_006592	A0A367KUR6	A0A367IME5	UPF0020 domain-containing protein.	Methyltransf_11 domain-containing protein.	0.552
CU098_001077	CU098_011687	A0A367KUR6	A0A367K459	UPF0020 domain-containing protein.	Uncharacterized protein.	0.980
CU098_001077	NOB1	A0A367KUR6	A0A367KTZ0	UPF0020 domain-containing protein.	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	0.661
CU098_001341	CU098_006592	A0A367INF9	A0A367IME5	UPF0020 domain-containing protein.	Methyltransf_11 domain-containing protein.	0.552
CU098_001341	CU098_011687	A0A367INF9	A0A367K459	UPF0020 domain-containing protein.	Uncharacterized protein.	0.980
CU098_001341	NOB1	A0A367INF9	A0A367KTZ0	UPF0020 domain-containing protein.	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	0.661
CU098_006592	CU098_001077	A0A367IME5	A0A367KUR6	Methyltransf_11 domain-containing protein.	UPF0020 domain-containing protein.	0.552
CU098_006592	CU098_001341	A0A367IME5	A0A367INF9	Methyltransf_11 domain-containing protein.	UPF0020 domain-containing protein.	0.552
CU098_006592	CU098_011687	A0A367IME5	A0A367K459	Methyltransf_11 domain-containing protein.	Uncharacterized protein.	0.934
CU098_006592	DRS1_1	A0A367IME5	A0A367IKV6	Methyltransf_11 domain-containing protein.	Nucleolar DEAD-box protein required for synthesis of 60S ribosomal subunit; Belongs to the DEAD box helicase family.	0.576
CU098_006592	DRS1_2	A0A367IME5	A0A367JBX9	Methyltransf_11 domain-containing protein.	Nucleolar DEAD-box protein required for synthesis of 60S ribosomal subunit; Belongs to the DEAD box helicase family.	0.576
CU098_006592	GDE1_1	A0A367IME5	A0A367KUP9	Methyltransf_11 domain-containing protein.	Glycerophosphocholine phosphodiesterase.	0.662
CU098_006592	GDE1_2	A0A367IME5	A0A367K976	Methyltransf_11 domain-containing protein.	Glycerophosphocholine phosphodiesterase.	0.662
CU098_006592	NOB1	A0A367IME5	A0A367KTZ0	Methyltransf_11 domain-containing protein.	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	0.701
CU098_006592	PHO81_1	A0A367IME5	A0A367KLC0	Methyltransf_11 domain-containing protein.	Phosphate system positive regulatory protein pho81.	0.788
CU098_006592	PHO81_2	A0A367IME5	A0A367KJ01	Methyltransf_11 domain-containing protein.	Phosphate system positive regulatory protein pho81.	0.788
CU098_011687	CU098_001077	A0A367K459	A0A367KUR6	Uncharacterized protein.	UPF0020 domain-containing protein.	0.980
CU098_011687	CU098_001341	A0A367K459	A0A367INF9	Uncharacterized protein.	UPF0020 domain-containing protein.	0.980
CU098_011687	CU098_006592	A0A367K459	A0A367IME5	Uncharacterized protein.	Methyltransf_11 domain-containing protein.	0.934
CU098_011687	NOB1	A0A367K459	A0A367KTZ0	Uncharacterized protein.	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	0.934