CU098_003849 protein (Rhizopus stolonifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CU098_003849

Aa_trans domain-containing protein. (244 aa)

Predicted Functional Partners:

CU098_001514

0.720

VMA6

0.620

VMA2

0.611

VMA5

0.597

CU098_003941

0.592

CU098_008683

0.592

CU098_008578

0.519

CU098_006152

0.519

VMA4

0.507

LST8_1

0.493

Your Current Organism:

Rhizopus stolonifer

NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CU098_001514	CU098_003849	A0A367KQN8	A0A367IMP9	Uncharacterized protein.	Aa_trans domain-containing protein.	0.720
CU098_001514	CU098_003941	A0A367KQN8	A0A367IIX4	Uncharacterized protein.	Uncharacterized protein.	0.991
CU098_001514	CU098_006152	A0A367KQN8	A0A367KQ71	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.983
CU098_001514	CU098_008578	A0A367KQN8	A0A367KJ67	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.983
CU098_001514	CU098_008683	A0A367KQN8	A0A367J0D0	Uncharacterized protein.	Uncharacterized protein.	0.991
CU098_001514	LST8_1	A0A367KQN8	A0A367IKI5	Uncharacterized protein.	TOR complex subunit lst8.	0.969
CU098_001514	VMA2	A0A367KQN8	A0A367KNM1	Uncharacterized protein.	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	0.978
CU098_001514	VMA4	A0A367KQN8	A0A367KXB5	Uncharacterized protein.	V-ATPase V1 sector subunit E.	0.853
CU098_001514	VMA5	A0A367KQN8	A0A367KS94	Uncharacterized protein.	V-type proton ATPase subunit C; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.854
CU098_001514	VMA6	A0A367KQN8	A0A367KPI6	Uncharacterized protein.	V-type proton ATPase subunit; Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. The active enzyme consists of a catalytic V1 domain attached to an integral membrane V0 proton pore complex. This subunit is a non-integral membrane component of the membrane pore domain and is required for proper assembly of the V0 sector. Might be involved in the regulated assembly of V1 subunits onto the membrane sector or alternatively may prevent the passage of protons through V0 pores; Belongs to the V-ATPase V0D/AC39 subunit family.	0.891
CU098_003849	CU098_001514	A0A367IMP9	A0A367KQN8	Aa_trans domain-containing protein.	Uncharacterized protein.	0.720
CU098_003849	CU098_003941	A0A367IMP9	A0A367IIX4	Aa_trans domain-containing protein.	Uncharacterized protein.	0.592
CU098_003849	CU098_006152	A0A367IMP9	A0A367KQ71	Aa_trans domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.519
CU098_003849	CU098_008578	A0A367IMP9	A0A367KJ67	Aa_trans domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.519
CU098_003849	CU098_008683	A0A367IMP9	A0A367J0D0	Aa_trans domain-containing protein.	Uncharacterized protein.	0.592
CU098_003849	LST8_1	A0A367IMP9	A0A367IKI5	Aa_trans domain-containing protein.	TOR complex subunit lst8.	0.493
CU098_003849	VMA2	A0A367IMP9	A0A367KNM1	Aa_trans domain-containing protein.	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	0.611
CU098_003849	VMA4	A0A367IMP9	A0A367KXB5	Aa_trans domain-containing protein.	V-ATPase V1 sector subunit E.	0.507
CU098_003849	VMA5	A0A367IMP9	A0A367KS94	Aa_trans domain-containing protein.	V-type proton ATPase subunit C; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.597
CU098_003849	VMA6	A0A367IMP9	A0A367KPI6	Aa_trans domain-containing protein.	V-type proton ATPase subunit; Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. The active enzyme consists of a catalytic V1 domain attached to an integral membrane V0 proton pore complex. This subunit is a non-integral membrane component of the membrane pore domain and is required for proper assembly of the V0 sector. Might be involved in the regulated assembly of V1 subunits onto the membrane sector or alternatively may prevent the passage of protons through V0 pores; Belongs to the V-ATPase V0D/AC39 subunit family.	0.620