CU098_007214 protein (Rhizopus stolonifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CU098_007214

Brix domain-containing protein. (156 aa)

Predicted Functional Partners:

CU098_010128

0.993

CU098_003045

0.993

CU098_010983

0.991

RLP24

0.991

NOP4

0.991

CU098_006322

0.990

RSL1D1_1

0.990

BRX1

0.990

RSL1D1_2

0.990

CU098_003560

0.988

Your Current Organism:

Rhizopus stolonifer

NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BRX1	CU098_003045	A0A367KPR1	A0A367JQY6	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	Uncharacterized protein.	0.989
BRX1	CU098_003560	A0A367KPR1	A0A367J6Y2	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	Uncharacterized protein.	0.986
BRX1	CU098_006322	A0A367KPR1	A0A367IKG8	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	Ribosomal_L30 domain-containing protein.	0.995
BRX1	CU098_007214	A0A367KPR1	A0A367INA4	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	Brix domain-containing protein.	0.990
BRX1	CU098_010128	A0A367KPR1	A0A367JBK4	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	Uncharacterized protein.	0.989
BRX1	CU098_010983	A0A367KPR1	A0A367JSH7	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	RRM domain-containing protein.	0.996
BRX1	NOP4	A0A367KPR1	A0A367KVH4	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	RNA recognition motif-containing protein.	0.989
BRX1	RLP24	A0A367KPR1	A0A367KLW5	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	ATPase-activating ribosome biosynthesis protein.	0.995
BRX1	RSL1D1_1	A0A367KPR1	A0A367J4X7	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	Ribosomal L1 domain-containing protein 1.	0.994
BRX1	RSL1D1_2	A0A367KPR1	A0A367KTL4	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	Ribosomal L1 domain-containing protein 1.	0.994
CU098_003045	BRX1	A0A367JQY6	A0A367KPR1	Uncharacterized protein.	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	0.989
CU098_003045	CU098_003560	A0A367JQY6	A0A367J6Y2	Uncharacterized protein.	Uncharacterized protein.	0.908
CU098_003045	CU098_006322	A0A367JQY6	A0A367IKG8	Uncharacterized protein.	Ribosomal_L30 domain-containing protein.	0.967
CU098_003045	CU098_007214	A0A367JQY6	A0A367INA4	Uncharacterized protein.	Brix domain-containing protein.	0.993
CU098_003045	CU098_010983	A0A367JQY6	A0A367JSH7	Uncharacterized protein.	RRM domain-containing protein.	0.992
CU098_003045	NOP4	A0A367JQY6	A0A367KVH4	Uncharacterized protein.	RNA recognition motif-containing protein.	0.921
CU098_003045	RLP24	A0A367JQY6	A0A367KLW5	Uncharacterized protein.	ATPase-activating ribosome biosynthesis protein.	0.965
CU098_003045	RSL1D1_1	A0A367JQY6	A0A367J4X7	Uncharacterized protein.	Ribosomal L1 domain-containing protein 1.	0.782
CU098_003045	RSL1D1_2	A0A367JQY6	A0A367KTL4	Uncharacterized protein.	Ribosomal L1 domain-containing protein 1.	0.782
CU098_003560	BRX1	A0A367J6Y2	A0A367KPR1	Uncharacterized protein.	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	0.986