CU098_007214 protein (Rhizopus stolonifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Rhizopus stolonifer

NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BRX1	CU098_003045	A0A367KPR1	A0A367JQY6	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	Uncharacterized protein.	0.977
BRX1	CU098_005849	A0A367KPR1	A0A367JZB3	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	Uncharacterized protein.	0.989
BRX1	CU098_007214	A0A367KPR1	A0A367INA4	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	Brix domain-containing protein.	0.984
BRX1	CU098_010128	A0A367KPR1	A0A367JBK4	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	Uncharacterized protein.	0.977
BRX1	CU098_010983	A0A367KPR1	A0A367JSH7	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	RRM domain-containing protein.	0.994
BRX1	DBP9	A0A367KPR1	A0A367JQ73	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	ATP-dependent DNA/RNA helicase.	0.981
BRX1	ERB1_1	A0A367KPR1	A0A367J6B6	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	Ribosome bioproteinsis protein erb1.	0.983
BRX1	ERB1_2	A0A367KPR1	A0A367IZS0	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	Ribosome bioproteinsis protein erb1.	0.983
BRX1	NOC2_2	A0A367KPR1	A0A367K2T1	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	Nucleolar Complex 2 protein.	0.983
BRX1	NOP2	A0A367KPR1	A0A367KGK9	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	rRNA (Cytosine-C5-)-methyltransferase nop2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.994
CU098_003045	BRX1	A0A367JQY6	A0A367KPR1	Uncharacterized protein.	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	0.977
CU098_003045	CU098_005849	A0A367JQY6	A0A367JZB3	Uncharacterized protein.	Uncharacterized protein.	0.718
CU098_003045	CU098_007214	A0A367JQY6	A0A367INA4	Uncharacterized protein.	Brix domain-containing protein.	0.991
CU098_003045	CU098_010128	A0A367JQY6	A0A367JBK4	Uncharacterized protein.	Uncharacterized protein.	0.545
CU098_003045	CU098_010983	A0A367JQY6	A0A367JSH7	Uncharacterized protein.	RRM domain-containing protein.	0.972
CU098_003045	DBP9	A0A367JQY6	A0A367JQ73	Uncharacterized protein.	ATP-dependent DNA/RNA helicase.	0.889
CU098_003045	ERB1_1	A0A367JQY6	A0A367J6B6	Uncharacterized protein.	Ribosome bioproteinsis protein erb1.	0.957
CU098_003045	ERB1_2	A0A367JQY6	A0A367IZS0	Uncharacterized protein.	Ribosome bioproteinsis protein erb1.	0.957
CU098_003045	NOC2_2	A0A367JQY6	A0A367K2T1	Uncharacterized protein.	Nucleolar Complex 2 protein.	0.942
CU098_003045	NOP2	A0A367JQY6	A0A367KGK9	Uncharacterized protein.	rRNA (Cytosine-C5-)-methyltransferase nop2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.944