STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CU098_004107Uncharacterized protein. (378 aa)    
Predicted Functional Partners:
CRP79
Poly(A) binding protein Crp79.
    
 
 0.844
NEDD8
Nedd8-conjugating enzyme UBE2F.
    
 
 0.828
CU098_012679
Ubiquitin-like domain-containing protein.
    
 
 0.828
RFA1_1
Replication factor A protein 1.
    
   0.758
RFA1_2
Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.
    
   0.758
NSA2_2
Ribosome bioproteinsis protein.
    
   0.699
NSA2_1
Ribosome bioproteinsis protein.
    
   0.699
RFA2
Replication factor A protein 2.
    
   0.684
USP14
Ubiquitin carboxyl-terminal hydrolase.
      
 0.567
CU098_007098
USP domain-containing protein.
      
 0.564
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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