STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CU098_004531PLD phosphodiesterase domain-containing protein. (410 aa)    
Predicted Functional Partners:
TRP5_1
Tryptophan synthase.
    
 0.815
TRP5_2
Tryptophan synthase.
    
 0.815
TRP5_3
Tryptophan synthase.
    
 0.815
CU098_003770
Uncharacterized protein.
    
 0.750
CU098_011166
Uncharacterized protein.
    
 0.750
CU098_000795
Uncharacterized protein.
    
 
 0.601
CU098_000088
AAA_12 domain-containing protein.
    
 
 0.601
CU098_007619
Endo/exonuclease/phosphatase domain-containing protein.
  
 
  0.592
FKBP5
FK506-binding protein 5.
  
 
 0.560
CU098_011464
SPX domain-containing protein.
    
 0.558
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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