STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CU098_003064BHLH domain-containing protein. (199 aa)    
Predicted Functional Partners:
CU098_001722
Uncharacterized protein.
    
  0.714
UFD4_1
Ubiquitin fusion degradation protein 4.
    
   0.706
SIR2
NAD-dependent histone deacetylase sir2.
    
 0.653
CU098_001293
Uncharacterized protein.
   
  0.633
CU098_000591
PHD domain-containing protein.
   
  0.633
CU098_003047
E2F_TDP domain-containing protein.
    
  0.624
CU098_012806
E2F_TDP domain-containing protein.
    
  0.624
RIM11_2
Regulator of ime2.
    
 0.614
RIM11_1
Regulator of ime2.
    
 0.614
RIM11_5
Regulator of ime2.
    
 0.614
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.