STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAP1_1Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (405 aa)    
Predicted Functional Partners:
CU098_007840
YTH domain-containing protein.
   
 0.975
CU098_003446
Uncharacterized protein.
   
 0.965
CU098_000588
CID domain-containing protein.
    
 0.965
CU098_012456
Uncharacterized protein.
    
 0.965
FIP1L1
Pre-mRNA 3-end-processing factor fip1l1.
   
 0.964
CU098_005008
RRM domain-containing protein.
    
 0.961
CPSF1_1
Cleavage and polyadenylation specificity factor subunit 1.
    
 0.945
CPSF1_2
Cleavage and polyadenylation specificity factor subunit 1.
    
 0.945
RNA14_1
mRNA 3'-end-processing protein rna14.
    
 0.937
RNA14_2
mRNA 3'-end-processing protein rna14.
    
 0.937
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.