STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CU098_007419Uncharacterized protein. (172 aa)    
Predicted Functional Partners:
CU098_003446
Uncharacterized protein.
   
 0.834
RPB5
DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase II subunit 5).
    
  0.789
RPB3
45 kDa subunit of RNA polymerase II.
    
  0.789
RPB2
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.789
RPB6
DNA-directed RNA polymerases I II and III subunit RPABC2.
    
  0.789
RPB11
DNA-directed RNA polymerase II core subunit.
    
  0.789
RPB9
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
  0.784
MPH1_1
3'-5' DNA helicase.
   
 
 0.762
MPH1_2
3'-5' DNA helicase.
   
 
 0.762
CU098_010051
Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.
   
 
  0.747
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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