STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
STS1_2Protein DBF8. (256 aa)    
Predicted Functional Partners:
RPN11
Multicatalytic endopeptidase.
   
 
 0.876
CU098_004202
Uncharacterized protein.
   
 
 0.818
NOP4
RNA recognition motif-containing protein.
   
   0.802
CU098_007214
Brix domain-containing protein.
   
   0.801
NOP16
Nucleolar protein 16.
   
   0.799
SRP1_1
Importin subunit alpha; Belongs to the importin alpha family.
    
 
 0.764
SRP1_2
annotation not available
    
 
 0.764
IPI3
Pre-rRNA-processing protein ipi3.
   
  0.733
MAK5_2
ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
  
 0.729
MAK5_1
ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
  
 0.729
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.