BRO1_1 protein (Rhizopus stolonifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BRO1_1

Bck1-like resistance to osmotic shock. (515 aa)

Predicted Functional Partners:

SNF7_1

0.967

SNF7_2

0.967

HOG1_2

0.949

MPK1_1

0.949

MPK1_2

0.949

MPK1_3

0.949

MID1_1

0.949

HOG1_1

0.949

MPK1_4

0.949

MID1_2

0.949

Your Current Organism:

Rhizopus stolonifer

NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BRO1_1	HOG1_1	A0A367IP33	A0A367KQ88	Bck1-like resistance to osmotic shock.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.949
BRO1_1	HOG1_2	A0A367IP33	A0A367IND4	Bck1-like resistance to osmotic shock.	MAPK protein hog1.	0.949
BRO1_1	MID1_1	A0A367IP33	A0A367KCV8	Bck1-like resistance to osmotic shock.	UDP-N-acetylglucosamine transferase subunit ALG13; Involved in protein N-glycosylation. Essential for the second step of the dolichol-linked oligosaccharide pathway.	0.949
BRO1_1	MID1_2	A0A367IP33	A0A367KV01	Bck1-like resistance to osmotic shock.	Stretch-activated cation channel mid1.	0.949
BRO1_1	MPK1_1	A0A367IP33	A0A367IP01	Bck1-like resistance to osmotic shock.	Mitogen-activated protein kinase.	0.949
BRO1_1	MPK1_2	A0A367IP33	A0A367JH41	Bck1-like resistance to osmotic shock.	Mitogen-activated protein kinase.	0.949
BRO1_1	MPK1_3	A0A367IP33	A0A367JHX8	Bck1-like resistance to osmotic shock.	Mitogen-activated protein kinase.	0.949
BRO1_1	MPK1_4	A0A367IP33	A0A367KQE5	Bck1-like resistance to osmotic shock.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.949
BRO1_1	SNF7_1	A0A367IP33	A0A367JTU4	Bck1-like resistance to osmotic shock.	ESCRT-III subunit protein snf7.	0.967
BRO1_1	SNF7_2	A0A367IP33	A0A367JUD9	Bck1-like resistance to osmotic shock.	ESCRT-III subunit protein snf7.	0.967
HOG1_1	BRO1_1	A0A367KQ88	A0A367IP33	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Bck1-like resistance to osmotic shock.	0.949
HOG1_2	BRO1_1	A0A367IND4	A0A367IP33	MAPK protein hog1.	Bck1-like resistance to osmotic shock.	0.949
MID1_1	BRO1_1	A0A367KCV8	A0A367IP33	UDP-N-acetylglucosamine transferase subunit ALG13; Involved in protein N-glycosylation. Essential for the second step of the dolichol-linked oligosaccharide pathway.	Bck1-like resistance to osmotic shock.	0.949
MID1_2	BRO1_1	A0A367KV01	A0A367IP33	Stretch-activated cation channel mid1.	Bck1-like resistance to osmotic shock.	0.949
MPK1_1	BRO1_1	A0A367IP01	A0A367IP33	Mitogen-activated protein kinase.	Bck1-like resistance to osmotic shock.	0.949
MPK1_2	BRO1_1	A0A367JH41	A0A367IP33	Mitogen-activated protein kinase.	Bck1-like resistance to osmotic shock.	0.949
MPK1_3	BRO1_1	A0A367JHX8	A0A367IP33	Mitogen-activated protein kinase.	Bck1-like resistance to osmotic shock.	0.949
MPK1_4	BRO1_1	A0A367KQE5	A0A367IP33	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Bck1-like resistance to osmotic shock.	0.949
SNF7_1	BRO1_1	A0A367JTU4	A0A367IP33	ESCRT-III subunit protein snf7.	Bck1-like resistance to osmotic shock.	0.967
SNF7_1	SNF7_2	A0A367JTU4	A0A367JUD9	ESCRT-III subunit protein snf7.	ESCRT-III subunit protein snf7.	0.543