STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MSH3_3Mismatch repair protein msh3. (453 aa)    
Predicted Functional Partners:
MSH1_1
DNA mismatch repair ATPase msh1.
 
 0.996
MSH2_1
MutS-like protein.
 
 0.994
MSH6_1
DNA mismatch repair protein msh6.
 
0.971
CU098_007941
MutL_C domain-containing protein.
 
 0.969
MSH6_2
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
   
 0.961
MLH1_1
DNA mismatch repair protein.
 
 0.959
MSH2_3
MutS-like protein.
 
 
 0.944
PMS1_2
ATP-binding mismatch repair protein.
 
 0.944
PMS1_1
ATP-binding mismatch repair protein.
 
 0.944
MSH2_2
MutS-like protein.
  
0.942
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.