CU098_004789 protein (Rhizopus stolonifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CU098_004789

Uncharacterized protein. (398 aa)

Predicted Functional Partners:

CRP79

0.850

CU098_002695

0.674

CU098_004257

0.664

CU098_000453

0.646

ANAPC2

0.646

NEDD8

0.625

CU098_012679

0.625

KEX2_3

0.622

KEX2_1

0.622

KEX2_4

0.622

Your Current Organism:

Rhizopus stolonifer

NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANAPC2	CRP79	A0A367KSW7	A0A367J4J6	Anaphase-promoting complex subunit 2; Belongs to the cullin family.	Poly(A) binding protein Crp79.	0.967
ANAPC2	CU098_000453	A0A367KSW7	A0A367KNI6	Anaphase-promoting complex subunit 2; Belongs to the cullin family.	ANAPC4 domain-containing protein.	0.998
ANAPC2	CU098_002695	A0A367KSW7	A0A367IS44	Anaphase-promoting complex subunit 2; Belongs to the cullin family.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.728
ANAPC2	CU098_004257	A0A367KSW7	A0A367IPM8	Anaphase-promoting complex subunit 2; Belongs to the cullin family.	DOC domain-containing protein.	0.993
ANAPC2	CU098_004789	A0A367KSW7	A0A367IP59	Anaphase-promoting complex subunit 2; Belongs to the cullin family.	Uncharacterized protein.	0.646
ANAPC2	CU098_012679	A0A367KSW7	A0A367KM78	Anaphase-promoting complex subunit 2; Belongs to the cullin family.	Ubiquitin-like domain-containing protein.	0.777
ANAPC2	NEDD8	A0A367KSW7	A0A367KC46	Anaphase-promoting complex subunit 2; Belongs to the cullin family.	Nedd8-conjugating enzyme UBE2F.	0.777
CRP79	ANAPC2	A0A367J4J6	A0A367KSW7	Poly(A) binding protein Crp79.	Anaphase-promoting complex subunit 2; Belongs to the cullin family.	0.967
CRP79	CU098_000453	A0A367J4J6	A0A367KNI6	Poly(A) binding protein Crp79.	ANAPC4 domain-containing protein.	0.802
CRP79	CU098_002695	A0A367J4J6	A0A367IS44	Poly(A) binding protein Crp79.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.984
CRP79	CU098_004257	A0A367J4J6	A0A367IPM8	Poly(A) binding protein Crp79.	DOC domain-containing protein.	0.862
CRP79	CU098_004789	A0A367J4J6	A0A367IP59	Poly(A) binding protein Crp79.	Uncharacterized protein.	0.850
CRP79	CU098_012679	A0A367J4J6	A0A367KM78	Poly(A) binding protein Crp79.	Ubiquitin-like domain-containing protein.	0.990
CRP79	KEX2_1	A0A367J4J6	A0A367JKY6	Poly(A) binding protein Crp79.	Pheromone processing endoprotease; Belongs to the peptidase S8 family.	0.458
CRP79	KEX2_3	A0A367J4J6	A0A367ILC0	Poly(A) binding protein Crp79.	Pheromone processing endoprotease.	0.458
CRP79	KEX2_4	A0A367J4J6	A0A367KHM1	Poly(A) binding protein Crp79.	Pheromone processing endoprotease; Belongs to the peptidase S8 family.	0.458
CRP79	NEDD8	A0A367J4J6	A0A367KC46	Poly(A) binding protein Crp79.	Nedd8-conjugating enzyme UBE2F.	0.994
CU098_000453	ANAPC2	A0A367KNI6	A0A367KSW7	ANAPC4 domain-containing protein.	Anaphase-promoting complex subunit 2; Belongs to the cullin family.	0.998
CU098_000453	CRP79	A0A367KNI6	A0A367J4J6	ANAPC4 domain-containing protein.	Poly(A) binding protein Crp79.	0.802
CU098_000453	CU098_002695	A0A367KNI6	A0A367IS44	ANAPC4 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.707