Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CU098_001732Uncharacterized protein; Belongs to the AAA ATPase family. (466 aa)    
Predicted Functional Partners:
YOS9
Protein OS-9.
    
 0.903
CU098_001286
Uncharacterized protein.
    
 0.895
NPL4_2
Nuclear protein localization protein 4.
   
 0.890
NPL4_1
Nuclear protein localization protein 4.
   
 0.890
CU098_011724
Uncharacterized protein.
   
 0.883
CRP79
Poly(A) binding protein Crp79.
   
 0.870
CU098_007232
UBX domain-containing protein.
    
 0.867
CU098_011882
Uncharacterized protein.
    
 0.867
CU098_010431
3'-5' exonuclease domain-containing protein.
   
 0.830
CU098_004720
3'-5' exonuclease domain-containing protein.
   
 0.830
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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