STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CU098_004013RNA-dependent RNA polymerase. (478 aa)    
Predicted Functional Partners:
CU098_010818
Uncharacterized protein.
    
 
 0.763
DCL1_1
Dicer-like protein 1.
    
 
 0.623
CU098_000927
RNase III domain-containing protein.
    
 
 0.623
DCL1_2
Dicer-like protein 1; Belongs to the helicase family. Dicer subfamily.
    
 
 0.623
DCL1_3
Dicer-like protein 1; Belongs to the helicase family. Dicer subfamily.
    
 
 0.623
ERI1
3'-5' exoribonuclease 1.
    
 
 0.602
SPB4
ATP-dependent rRNA helicase spb4.
      
 0.550
ERG11_1
Lanosterol 14-alpha-demethylase; Belongs to the cytochrome P450 family.
      
 0.546
ERG11_2
Lanosterol 14-alpha-demethylase; Belongs to the cytochrome P450 family.
      
 0.546
ZNFX1_1
NFX1-type zinc finger-containing protein 1.
    
 
 0.517
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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