STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SETD4_2SET domain-containing protein 4. (375 aa)    
Predicted Functional Partners:
FAM63B_1
Ubiquitin carboxyl-terminal hydrolase MINDY-2.
    
 0.821
FAM63B_2
Ubiquitin carboxyl-terminal hydrolase MINDY-2.
    
 0.821
SUCLA2
Beta' subunit.
   
 0.777
ACL1
Citrate synthase.
   
  0.765
CU098_001783
Uncharacterized protein.
   
 
 0.728
CU098_010084
Uncharacterized protein.
   
 
 0.728
GLO1
Lactoylglutathione lyase.
   
 
 0.728
CU098_007495
Malate dehydrogenase.
   
 
  0.706
RPB2
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.679
LAT1
Acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
     
  0.659
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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